PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1517
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 230aa    MW: 26827.6 Da    PI: 6.6267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1517genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.8e-204794148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++ +G ++WktIa + g++R++k+c++rw++yl
      Gh_A08G1517 47 KGSWTAEEDRRLAKYIEIHGAKRWKTIAIKSGLNRCGKSCRLRWLNYL 94
                     799*******************************************97 PP

2Myb_DNA-binding53.36.6e-17100145148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
      Gh_A08G1517 100 RGNISDEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 145
                      7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1144294IPR017930Myb domain
SuperFamilySSF466892.38E-2946141IPR009057Homeodomain-like
SMARTSM007174.6E-164696IPR001005SANT/Myb domain
PfamPF002492.0E-174794IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2448101IPR009057Homeodomain-like
CDDcd001672.40E-114994No hitNo description
PROSITE profilePS5129426.76795149IPR017930Myb domain
SMARTSM007172.9E-1699147IPR001005SANT/Myb domain
PfamPF002493.6E-15100145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-25102149IPR009057Homeodomain-like
CDDcd001676.20E-11104145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MFLYSFTSLP LFLTNHLCLP FSLFASSHCW LIMAPKKDGV SKRVFNKGSW TAEEDRRLAK  60
YIEIHGAKRW KTIAIKSGLN RCGKSCRLRW LNYLRPNIKR GNISDEEEDL IIRLHKLLGN  120
RWSLIAGRLP GRTDNEIKNY WNSHLSKKII NHDVRTEQTS SSEQIVPHKA WETVQMEEEE  180
VVKGSDEIEN SEFSIDVDEF FDFTTEGCFS LDWVNKFLEL DDQQDPLAMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-304514925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.80860.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6261600.0AY626160.1 Gossypium arboreum myb family transcription factor 2/fiber factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296278.11e-142transcription factor WER-like
SwissprotQ9SEI09e-54WER_ARATH; Transcription factor WER
TrEMBLA0A0D2S2S71e-163A0A0D2S2S7_G
STRINGVIT_00s0341g00050.t013e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.15e-55myb domain protein 66